Step-by-step instructions

This section contains step-by-step instructions on how to download, launch, and use Micro-Meta App to collect microscopy metadata.

• Launching Micro-Meta App
  • A - Launching the standalone version of Micro-Meta App.
  • B - Launching the Micro-Meta App from the 4DN Data Portal
  • C - Launching the Micro-Meta App OMERO.web plugin
    • Step 1
    • Step 2
    • Step 3
    • Step 4
    • Step 5
    • Step 6
• Using Micro-Meta App
  • Two Micro-Meta App data processing workflows
    • A . Manage Instrument
    • A . Manage Settings
• A. Managing Microscope Specification files
  • A.1 Selecting Tier level
  • A.2 Creating or Opening a Microscope file
    • A.2.1 Creating from scratch
    • A.2.2 Loading from file
    • A.2.3 Loading from the Repository/Home folder
  • A.3 Adding and Editing Hardware components to the Canvas
    • Step 1
    • Step 2
    • Step 3
  • A.4 Saving Microscope files
• B. Managing Acquisition Settings files
  • B.1 Selecting Tier level
  • B.2 Selecting an existing Microscope file
    • B.2.1 Loading from file
    • B.2.2 Loading from the Repository/Home folder
  • B.3 Selecting the Image to be documented
  • B.4 Creating or Opening a Settings file
  • B.5 Working on a Settings file
    • B.5.1 Enter general Image acquisition settings
    • B.5.2 Εnter/Edit basic Channel settings
    • B.5.3 Εnter/Edit advanced Channel settings
• Micro Meta App Video Tutorials
  • Introduction
  • Using Example Data Files
  • Manage Instrument Videos
    • 01- Download from GitHub, Install and Launch the Micro-Meta App (special instructions for MacOS)
    • 02 - Launch App and load microscope from repository
    • 03 - Manage Instrument-Filter Sets
    • 04 - Manage Instrument-MultiPass Filter-Dichroic
    • 05 - Manage Instrument-LED
    • 06 - Manage Instrument-Advanced components
  • Manage Settings Videos
    • 07 - Manage Settings-Launch
    • 08 - Manage Settings-Image-basic
    • 09 - Manage Settings-Image-advanced
    • 10 - Manage Settings-Channels-basic
    • 11 - Manage Settings-Channels-advanced
    • 12 - Manage Settings-Pixels-edit
    • 13 - Manage Settings-Planes-create
    • 14 - Manage Settings-Planes-imported
    • 18 - Manage Settings - Common situations 1
    • 19 - Manage Settings - Common situations 2
• Other important Video Tutorials
  • Report Micro-Meta App errors
    • 15- Open Developers Tools
  • Manage Java Version
    • 16- Check Java version
    • 17 - Make sure your Mac computer uses the correct version of Java