Micro Meta App Video Tutorials

This is a series of video tutorials to help you get started with the Micro-Meta App.

Introduction

This video was used to introduce the use of Micro-Meta App for an introductory Microscopy graduate course at UMass Medical School.

Micro-Meta App-an introduction

Using Example Data Files

Use these videos to get started with using Micro-Meta App after downloading the example data files available on Zenodo

Part 1/2

Part 2/2

Manage Instrument Videos

These videos explain different aspects of the Manage Instrument section of Micro-Meta App.

01- Download from GitHub, Install and Launch the Micro-Meta App (special instructions for MacOS)

Video 01

Tip

Please note that if you intend to use Micro-Meta App on MacOS you might encounter difficulties un-zipping and launching the MacOS Zip. To address these issues please follow the special instructions specified starting at minute 0:47 on Video 01

02 - Launch App and load microscope from repository

Video 02

03 - Manage Instrument-Filter Sets

Video 03

04 - Manage Instrument-MultiPass Filter-Dichroic

Video 04

05 - Manage Instrument-LED

Video 05

06 - Manage Instrument-Advanced components

Video 06

Manage Settings Videos

These videos explain different aspects of the Manage Settings section of Micro-Meta App.

07 - Manage Settings-Launch

This video explains how to get started with the Manage Settings functionality of Micro-Meta App. file header using BioFormats.

Video 07

08 - Manage Settings-Image-basic

This video explains how to manage basic aspects of Image metadata that was imported automatically from the image file header using BioFormats.

Video 08

09 - Manage Settings-Image-advanced

This video explains how to manage advanced aspects of Image metadata that was not imported automatically from the image file header using BioFormats.

Video 09

10 - Manage Settings-Channels-basic

This video explains how to manage basic aspects of Channels metadata that was not imported automatically from the image file header using BioFormats.

Video 10

11 - Manage Settings-Channels-advanced

This video explains how to manage advanced aspects of Channels metadata that was not imported automatically from the image file header using BioFormats.

Video 11

12 - Manage Settings-Pixels-edit

This video explains how to manage Pixels metadata that has been imported automatically from the image file header using BioFormats.

Video 12

13 - Manage Settings-Planes-create

This video explains how to create Plane metadata when none was imported automatically from the image file header using BioFormats.

Video 13

14 - Manage Settings-Planes-imported

This video explains how to manage Plane metadata that has been imported automatically from the image file header using BioFormats.

Video 14

18 - Manage Settings - Common situations 1

This video explains what to do when the Manage Settings canvas is all Zoomed in and the items do not show up properly on the screen.

Video 18

19 - Manage Settings - Common situations 2

This video, shows how to deal with a situation in which a hardware component that is not validated in the Manage Instrument side of the app cannot be added in the Settings file.

Video 19